STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_10550Hypothetical protein. (97 aa)    
Predicted Functional Partners:
nadE1
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.782
AXFE_10540
Hypothetical protein.
       0.773
malL1
Oligo-1,6-glucosidase.
    
  0.643
treS
Trehalose synthase/amylase TreS.
    
  0.643
glgE1
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1.
    
  0.643
malL2
Oligo-1,6-glucosidase 1.
    
  0.643
AXFE_16730
Hypothetical protein.
  
     0.552
AXFE_10530
Transposase IS200 like protein.
       0.515
AXFE_24530
Bacterial regulatory proteins, tetR family.
  
     0.431
AXFE_14280
Hypothetical protein.
  
     0.407
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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