Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_07830 | AXFE_33880 | AXFE_07830 | AXFE_33880 | pH-sensitive adenylate cyclase. | Cyclic nucleotide-gated potassium channel. | 0.914 |
AXFE_07830 | crp | AXFE_07830 | AXFE_10730 | pH-sensitive adenylate cyclase. | cAMP receptor protein. | 0.939 |
AXFE_07830 | trxB1 | AXFE_07830 | AXFE_09570 | pH-sensitive adenylate cyclase. | Thioredoxin reductase. | 0.408 |
AXFE_33880 | AXFE_07830 | AXFE_33880 | AXFE_07830 | Cyclic nucleotide-gated potassium channel. | pH-sensitive adenylate cyclase. | 0.914 |
AXFE_33880 | crp | AXFE_33880 | AXFE_10730 | Cyclic nucleotide-gated potassium channel. | cAMP receptor protein. | 0.937 |
AXFE_33880 | glpF | AXFE_33880 | AXFE_09520 | Cyclic nucleotide-gated potassium channel. | Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. | 0.852 |
AXFE_33880 | gltB2 | AXFE_33880 | AXFE_29190 | Cyclic nucleotide-gated potassium channel. | Glutamate synthase [NADPH] large chain. | 0.892 |
AXFE_33880 | queD | AXFE_33880 | AXFE_34190 | Cyclic nucleotide-gated potassium channel. | 6-carboxy-5,6,7,8-tetrahydropterin synthase. | 0.801 |
AXFE_33880 | rpoA | AXFE_33880 | AXFE_05090 | Cyclic nucleotide-gated potassium channel. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.848 |
AXFE_33880 | rpoB | AXFE_33880 | AXFE_05420 | Cyclic nucleotide-gated potassium channel. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.858 |
AXFE_33880 | rpoC | AXFE_33880 | AXFE_05410 | Cyclic nucleotide-gated potassium channel. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.845 |
AXFE_33880 | rpoZ | AXFE_33880 | AXFE_23800 | Cyclic nucleotide-gated potassium channel. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.824 |
AXFE_33880 | trxB1 | AXFE_33880 | AXFE_09570 | Cyclic nucleotide-gated potassium channel. | Thioredoxin reductase. | 0.837 |
crp | AXFE_07830 | AXFE_10730 | AXFE_07830 | cAMP receptor protein. | pH-sensitive adenylate cyclase. | 0.939 |
crp | AXFE_33880 | AXFE_10730 | AXFE_33880 | cAMP receptor protein. | Cyclic nucleotide-gated potassium channel. | 0.937 |
crp | glpF | AXFE_10730 | AXFE_09520 | cAMP receptor protein. | Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. | 0.852 |
crp | gltB2 | AXFE_10730 | AXFE_29190 | cAMP receptor protein. | Glutamate synthase [NADPH] large chain. | 0.892 |
crp | queD | AXFE_10730 | AXFE_34190 | cAMP receptor protein. | 6-carboxy-5,6,7,8-tetrahydropterin synthase. | 0.801 |
crp | rpoA | AXFE_10730 | AXFE_05090 | cAMP receptor protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.848 |
crp | rpoB | AXFE_10730 | AXFE_05420 | cAMP receptor protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.858 |
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