helD protein (Acidithrix ferrooxidans) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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Score

helD

Helicase IV. (730 aa)

Predicted Functional Partners:

rpoB

0.966

rpoC

0.964

rpoZ

0.950

rpoA

0.941

uvrD12

0.779

whmD2

0.701

whmD1

0.673

whiB1

0.668

whiB

0.665

lon

0.660

Your Current Organism:

Acidithrix ferrooxidans

NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
helD	lon	AXFE_11100	AXFE_31530	Helicase IV.	Lon protease.	0.660
helD	rpoA	AXFE_11100	AXFE_05090	Helicase IV.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
helD	rpoB	AXFE_11100	AXFE_05420	Helicase IV.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
helD	rpoC	AXFE_11100	AXFE_05410	Helicase IV.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.964
helD	rpoZ	AXFE_11100	AXFE_23800	Helicase IV.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.950
helD	uvrD12	AXFE_11100	AXFE_28980	Helicase IV.	ATP-dependent DNA helicase UvrD1.	0.779
helD	whiB	AXFE_11100	AXFE_08530	Helicase IV.	Transcriptional regulator WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.665
helD	whiB1	AXFE_11100	AXFE_13760	Helicase IV.	Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.668
helD	whmD1	AXFE_11100	AXFE_30240	Helicase IV.	Transcriptional regulator WhiB2; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.673
helD	whmD2	AXFE_11100	AXFE_31620	Helicase IV.	Transcriptional regulator WhiB2; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.701
lon	helD	AXFE_31530	AXFE_11100	Lon protease.	Helicase IV.	0.660
rpoA	helD	AXFE_05090	AXFE_11100	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Helicase IV.	0.941
rpoA	rpoB	AXFE_05090	AXFE_05420	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	AXFE_05090	AXFE_05410	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoZ	AXFE_05090	AXFE_23800	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoB	helD	AXFE_05420	AXFE_11100	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Helicase IV.	0.966
rpoB	rpoA	AXFE_05420	AXFE_05090	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	AXFE_05420	AXFE_05410	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	AXFE_05420	AXFE_23800	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoB	uvrD12	AXFE_05420	AXFE_28980	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ATP-dependent DNA helicase UvrD1.	0.643