Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_12150 | perR1 | AXFE_12150 | AXFE_12120 | Hypothetical protein. | Peroxide-responsive repressor PerR; Belongs to the Fur family. | 0.540 |
AXFE_12150 | regX31 | AXFE_12150 | AXFE_12130 | Hypothetical protein. | Sensory transduction protein regX3. | 0.536 |
AXFE_12150 | senX3 | AXFE_12150 | AXFE_12140 | Hypothetical protein. | Signal-transduction histidine kinase senX3. | 0.561 |
AXFE_30490 | gltB2 | AXFE_30490 | AXFE_29190 | Alkyl hydroperoxide reductase subunit C. | Glutamate synthase [NADPH] large chain. | 0.573 |
AXFE_30490 | perR1 | AXFE_30490 | AXFE_12120 | Alkyl hydroperoxide reductase subunit C. | Peroxide-responsive repressor PerR; Belongs to the Fur family. | 0.550 |
AXFE_30490 | rpoB | AXFE_30490 | AXFE_05420 | Alkyl hydroperoxide reductase subunit C. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.557 |
gltB2 | AXFE_30490 | AXFE_29190 | AXFE_30490 | Glutamate synthase [NADPH] large chain. | Alkyl hydroperoxide reductase subunit C. | 0.573 |
gltB2 | perR1 | AXFE_29190 | AXFE_12120 | Glutamate synthase [NADPH] large chain. | Peroxide-responsive repressor PerR; Belongs to the Fur family. | 0.901 |
gltB2 | rpoA | AXFE_29190 | AXFE_05090 | Glutamate synthase [NADPH] large chain. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.539 |
gltB2 | rpoB | AXFE_29190 | AXFE_05420 | Glutamate synthase [NADPH] large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.545 |
gltB2 | rpoC | AXFE_29190 | AXFE_05410 | Glutamate synthase [NADPH] large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.591 |
perR1 | AXFE_12150 | AXFE_12120 | AXFE_12150 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | Hypothetical protein. | 0.540 |
perR1 | AXFE_30490 | AXFE_12120 | AXFE_30490 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | Alkyl hydroperoxide reductase subunit C. | 0.550 |
perR1 | gltB2 | AXFE_12120 | AXFE_29190 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | Glutamate synthase [NADPH] large chain. | 0.901 |
perR1 | regX31 | AXFE_12120 | AXFE_12130 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | Sensory transduction protein regX3. | 0.803 |
perR1 | rpoA | AXFE_12120 | AXFE_05090 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.785 |
perR1 | rpoB | AXFE_12120 | AXFE_05420 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.594 |
perR1 | rpoC | AXFE_12120 | AXFE_05410 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.591 |
perR1 | rpoZ | AXFE_12120 | AXFE_23800 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.585 |
perR1 | senX3 | AXFE_12120 | AXFE_12140 | Peroxide-responsive repressor PerR; Belongs to the Fur family. | Signal-transduction histidine kinase senX3. | 0.807 |
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