STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
senX3Signal-transduction histidine kinase senX3. (352 aa)    
Predicted Functional Partners:
regX31
Sensory transduction protein regX3.
 0.996
tcrX1
Putative transcriptional regulatory protein TcrX.
 0.957
kdpD2
Sensor protein KdpD.
  
 0.937
cph22
Phytochrome-like protein cph2.
 
 0.924
tcrA2
Transcriptional regulatory protein TcrA.
 0.924
tcrA1
Transcriptional regulatory protein TcrA.
 0.918
regX32
Sensory transduction protein regX3.
 0.918
tcrX2
Putative transcriptional regulatory protein TcrX.
 0.916
yycF
Transcriptional regulatory protein YycF.
 0.915
kdpE
KDP operon transcriptional regulatory protein KdpE.
 0.911
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.