STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_12180AAA-like domain protein. (437 aa)    
Predicted Functional Partners:
AXFE_12150
Hypothetical protein.
 
     0.866
AXFE_12200
Type IV secretory system conjugative DNA transfer.
 
  
 0.832
AXFE_33490
Hypothetical protein.
 
     0.814
AXFE_33470
TraM recognition site of TraD and TraG.
 
  
 0.802
traG
Conjugal transfer protein TraG.
 
  
 0.801
traI
Multifunctional conjugation protein TraI.
 
   
 0.781
AXFE_07870
TrwC relaxase.
 
   
 0.730
AXFE_09490
Hypothetical protein.
 
     0.697
AXFE_26610
Type IV secretion system protein VirB11.
    
 0.687
mepH
Murein DD-endopeptidase MepH precursor.
  
  
 0.686
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.