STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_12800CAAX amino terminal protease self- immunity. (250 aa)    
Predicted Functional Partners:
AXFE_26030
ABC-2 family transporter protein.
  
 
  0.618
ftsH2
ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.540
AXFE_12590
Major facilitator superfamily protein.
  
     0.532
drrB
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
   
  
 0.517
AXFE_12060
ABC-2 family transporter protein.
   
  
 0.517
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
       0.506
AXFE_24030
Hypothetical protein.
  
     0.501
rbfA
Ribosome-binding factor A.
  
     0.499
AXFE_07910
Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).
  
     0.490
AXFE_20160
Short chain dehydrogenase.
 
     0.462
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.