STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjAPutative NAD(P)H nitroreductase YdjA. (196 aa)    
Predicted Functional Partners:
cysG2
Siroheme synthase.
    
 0.808
nasF
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.794
moeZ
Putative adenylyltransferase/sulfurtransferase MoeZ.
    
  0.786
ndx1
Diadenosine hexaphosphate hydrolase; Belongs to the Nudix hydrolase family.
    
  0.760
sufC1
Vegetative protein 296.
       0.594
sufS
Cysteine desulfurase SufS; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.594
AXFE_13120
Putative metallo-hydrolase.
 
     0.517
AXFE_25280
NADH oxidase.
 
 0.503
gltB2
Glutamate synthase [NADPH] large chain.
     
 0.490
drrB
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
  
    0.456
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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