Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AXFE_01260 | subB1 | AXFE_01260 | AXFE_13200 | Putative cytochrome P450 124. | Ferredoxin-2. | 0.457 |
AXFE_01260 | thcD | AXFE_01260 | AXFE_33970 | Putative cytochrome P450 124. | Rhodocoxin reductase. | 0.640 |
AXFE_02620 | subB1 | AXFE_02620 | AXFE_13200 | VWA domain containing CoxE-like protein. | Ferredoxin-2. | 0.442 |
AXFE_21410 | subB1 | AXFE_21410 | AXFE_13200 | Thioesterase superfamily protein. | Ferredoxin-2. | 0.484 |
AXFE_21470 | subB1 | AXFE_21470 | AXFE_13200 | Alpha/beta hydrolase family protein. | Ferredoxin-2. | 0.434 |
AXFE_26990 | subB1 | AXFE_26990 | AXFE_13200 | Putative FAD-linked oxidoreductase. | Ferredoxin-2. | 0.415 |
AXFE_30700 | subB1 | AXFE_30700 | AXFE_13200 | Indolepyruvate ferredoxin oxidoreductase. | Ferredoxin-2. | 0.542 |
AXFE_30700 | thcD | AXFE_30700 | AXFE_33970 | Indolepyruvate ferredoxin oxidoreductase. | Rhodocoxin reductase. | 0.723 |
albA2 | subB1 | AXFE_31800 | AXFE_13200 | Antilisterial bacteriocin subtilosin biosynthesis protein AlbA. | Ferredoxin-2. | 0.413 |
secE | subB1 | AXFE_05480 | AXFE_13200 | Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | Ferredoxin-2. | 0.421 |
subB1 | AXFE_01260 | AXFE_13200 | AXFE_01260 | Ferredoxin-2. | Putative cytochrome P450 124. | 0.457 |
subB1 | AXFE_02620 | AXFE_13200 | AXFE_02620 | Ferredoxin-2. | VWA domain containing CoxE-like protein. | 0.442 |
subB1 | AXFE_21410 | AXFE_13200 | AXFE_21410 | Ferredoxin-2. | Thioesterase superfamily protein. | 0.484 |
subB1 | AXFE_21470 | AXFE_13200 | AXFE_21470 | Ferredoxin-2. | Alpha/beta hydrolase family protein. | 0.434 |
subB1 | AXFE_26990 | AXFE_13200 | AXFE_26990 | Ferredoxin-2. | Putative FAD-linked oxidoreductase. | 0.415 |
subB1 | AXFE_30700 | AXFE_13200 | AXFE_30700 | Ferredoxin-2. | Indolepyruvate ferredoxin oxidoreductase. | 0.542 |
subB1 | albA2 | AXFE_13200 | AXFE_31800 | Ferredoxin-2. | Antilisterial bacteriocin subtilosin biosynthesis protein AlbA. | 0.413 |
subB1 | secE | AXFE_13200 | AXFE_05480 | Ferredoxin-2. | Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.421 |
subB1 | tcrA1 | AXFE_13200 | AXFE_13190 | Ferredoxin-2. | Transcriptional regulatory protein TcrA. | 0.510 |
subB1 | thcD | AXFE_13200 | AXFE_33970 | Ferredoxin-2. | Rhodocoxin reductase. | 0.762 |
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