STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
subB1Ferredoxin-2. (63 aa)    
Predicted Functional Partners:
thcD
Rhodocoxin reductase.
    
 0.762
AXFE_30700
Indolepyruvate ferredoxin oxidoreductase.
    
 0.542
tcrA1
Transcriptional regulatory protein TcrA.
       0.510
AXFE_21410
Thioesterase superfamily protein.
  
     0.484
AXFE_01260
Putative cytochrome P450 124.
 
  
 0.457
AXFE_02620
VWA domain containing CoxE-like protein.
  
     0.442
AXFE_21470
Alpha/beta hydrolase family protein.
  
     0.434
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.421
AXFE_26990
Putative FAD-linked oxidoreductase.
  
  
  0.415
albA2
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
     0.413
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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