STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_13650LigB family dioxygenase. (257 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.686
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
  
 
 0.650
AXFE_22070
Flavin reductase like domain protein.
  
 
 0.606
ndmA
Methylxanthine N1-demethylase NdmA.
     
 0.605
ndoR
ferredoxin--NAD(P)(+) reductase (naphthalene dioxygenase ferredoxin-specific).
     
 0.604
yhhW
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.480
catD2
3-oxoadipate enol-lactonase 2.
    
 0.451
AXFE_10250
Amidohydrolase.
    
 0.441
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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