STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxSCarbon monoxide dehydrogenase small chain. (156 aa)    
Predicted Functional Partners:
cutM
Carbon monoxide dehydrogenase medium chain.
 0.999
cutL2
Carbon monoxide dehydrogenase large chain.
 0.999
coxM
Carbon monoxide dehydrogenase medium chain.
 0.996
coxL
Carbon monoxide dehydrogenase large chain.
 0.996
cutL3
Carbon monoxide dehydrogenase large chain.
 0.996
cutL4
Carbon monoxide dehydrogenase large chain.
 0.996
cutL1
Carbon monoxide dehydrogenase large chain.
 0.994
pucA2
Putative xanthine dehydrogenase subunit A.
 
 
 0.897
AXFE_08020
Hypothetical protein.
 
 
 0.835
pucA1
Putative xanthine dehydrogenase subunit A.
 
 
 0.814
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.