STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
czcRTranscriptional activator protein CzcR. (230 aa)    
Predicted Functional Partners:
tcrY2
Putative sensor histidine kinase TcrY.
 
 0.969
kinB
Alginate biosynthesis sensor protein KinB.
 
 0.918
arlS1
Signal transduction histidine-protein kinase ArlS.
 
 0.907
mprB
Signal transduction histidine-protein kinase/phosphatase MprB.
  
 0.905
tcrY4
Putative sensor histidine kinase TcrY.
 0.905
cusS
Sensor kinase CusS.
 
  0.898
tcrY3
Putative sensor histidine kinase TcrY.
 
  0.898
tcrY1
Putative sensor histidine kinase TcrY.
 0.894
arlS2
Signal transduction histidine-protein kinase ArlS.
  0.890
senX3
Signal-transduction histidine kinase senX3.
 0.888
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.