STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydiFAcetate CoA-transferase YdiF. (115 aa)    
Predicted Functional Partners:
cfiB2
2-oxoglutarate carboxylase small subunit.
    
 0.801
phaJ
(R)-specific enoyl-CoA hydratase.
 
  
  0.680
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.592
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.480
AXFE_17190
Hypothetical protein.
       0.466
lldD
L-lactate dehydrogenase; Cytochrome.
  
  
  0.449
AXFE_34510
Lactate 2-monooxygenase.
  
  
  0.445
fadB21
3-hydroxybutyryl-CoA dehydrogenase.
    
 0.424
fadB22
3-hydroxybutyryl-CoA dehydrogenase.
    
 0.424
yjmC
Putative oxidoreductase YjmC; Belongs to the LDH2/MDH2 oxidoreductase family.
   
 
  0.409
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.