STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknDSerine/threonine-protein kinase PknD. (665 aa)    
Predicted Functional Partners:
AXFE_11570
Subtilase family protein.
 
 0.805
AXFE_14710
Hypothetical protein.
    
   0.793
ftsK1
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.677
ftsK2
DNA translocase FtsK.
    
   0.677
AXFE_20450
Hypothetical protein.
    
 
 0.649
AXFE_25900
Hypothetical protein.
  
 0.641
acpP1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.602
acpP2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
   0.602
AXFE_09660
Fibronectin type III domain protein.
 
 
0.535
AXFE_17820
Putative helix-turn-helix domain of transposase IS66.
       0.528
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.