STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_18300Hypothetical protein. (92 aa)    
Predicted Functional Partners:
AXFE_19550
Group II intron, maturase-specific domain.
 
     0.962
AXFE_17970
Group II intron, maturase-specific domain.
 
     0.961
AXFE_36840
Group II intron, maturase-specific domain.
 
     0.961
ltrA2
Group II intron-encoded protein LtrA.
 
     0.740
AXFE_36940
Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.731
AXFE_05870
Group II intron, maturase-specific domain.
 
     0.730
AXFE_10560
Group II intron, maturase-specific domain.
 
     0.668
ltrA3
Group II intron-encoded protein LtrA.
  
     0.646
ltrA9
Group II intron-encoded protein LtrA.
  
     0.646
AXFE_18310
Hypothetical protein.
       0.520
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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