STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_18600Hypothetical protein. (125 aa)    
Predicted Functional Partners:
AXFE_18590
Hypothetical protein.
     0.992
AXFE_18610
Hypothetical protein.
     0.981
AXFE_34730
AP-4-A phosphorylase.
  
    0.597
uvrD2
ATP-dependent DNA helicase UvrD2.
  
 
  0.562
gltB2
Glutamate synthase [NADPH] large chain.
  
    0.538
rhlE
ATP-dependent RNA helicase RhlE.
 
 
  0.455
AXFE_18580
Hypothetical protein.
       0.414
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.412
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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