STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimB2GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase. (393 aa)    
Predicted Functional Partners:
AXFE_34280
Putative glycosyl hydrolase.
    
 0.771
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.723
uvrD2
ATP-dependent DNA helicase UvrD2.
    
 
 0.713
hddC2
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
 
 0.711
mshA4
D-inositol 3-phosphate glycosyltransferase.
  
     0.606
queG
Epoxyqueuosine reductase.
  
    0.544
pimC2
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol dimannoside mannosyltransferase.
  
     0.541
strE
dTDP-glucose 4,6-dehydratase.
  
 
  0.530
nagK
N-acetyl-D-glucosamine kinase.
       0.526
AXFE_19470
Polyketide cyclase / dehydrase and lipid transport.
  
    0.526
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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