STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_19560Hypothetical protein. (56 aa)    
Predicted Functional Partners:
AXFE_19570
Hypothetical protein; Resolvase, N terminal domain.
       0.773
AXFE_19580
Putative HTH-type transcriptional regulator.
       0.511
hycG1
Formate hydrogenlyase subunit 7.
       0.508
hyfB1
Hydrogenase-4 component B.
       0.508
hycD1
Formate hydrogenlyase subunit 4.
       0.508
AXFE_19620
Hydrogenase 4 membrane subunit.
       0.495
nuoM2
NADH-quinone oxidoreductase subunit M.
       0.495
hycE1
Formate hydrogenlyase subunit 5 precursor.
       0.495
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.