STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbiB3Coenzyme F420:L-glutamate ligase. (214 aa)    
Predicted Functional Partners:
cysG2
Siroheme synthase.
    
 0.808
nasF
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.794
moeZ
Putative adenylyltransferase/sulfurtransferase MoeZ.
    
  0.786
mutB
methylmalonyl-CoA mutase large subunit.
       0.768
scpA3
methylmalonyl-CoA mutase.
       0.768
ndx1
Diadenosine hexaphosphate hydrolase; Belongs to the Nudix hydrolase family.
    
  0.760
lcfB5
long-chain-fatty-acid--CoA ligase.
   
   0.730
bluB
5,6-dimethylbenzimidazole synthase.
  
     0.693
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
 
 0.680
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.621
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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