STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndmAMethylxanthine N1-demethylase NdmA. (355 aa)    
Predicted Functional Partners:
ndoR
ferredoxin--NAD(P)(+) reductase (naphthalene dioxygenase ferredoxin-specific).
    
 0.627
AXFE_13650
LigB family dioxygenase.
     
 0.605
AXFE_22180
Permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
       0.533
AXFE_01260
Putative cytochrome P450 124.
  
     0.517
frc
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
       0.480
bioI
Biotin biosynthesis cytochrome P450.
  
     0.472
AXFE_04640
Bacterial regulatory proteins, tetR family.
  
     0.407
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.