STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_25100Helix-turn-helix domain protein. (239 aa)    
Predicted Functional Partners:
AXFE_25090
Hypothetical protein.
 
     0.729
AXFE_33730
Hypothetical protein; Insertion element 4 transposase N-terminal.
  
     0.716
AXFE_34030
Hypothetical protein.
  
     0.705
AXFE_25080
Hypothetical protein.
 
     0.673
AXFE_25070
Hypothetical protein.
 
     0.649
nqo9
NADH-quinone oxidoreductase subunit 9; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
   0.606
hycG2
Formate hydrogenlyase subunit 7.
   
   0.554
AXFE_30490
Alkyl hydroperoxide reductase subunit C.
  
    0.552
yvoA3
HTH-type transcriptional repressor YvoA.
  
    0.487
zur
Zinc uptake regulation protein; Belongs to the Fur family.
  
    0.480
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.