STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpA3Catabolite control protein A. (354 aa)    
Predicted Functional Partners:
gltB2
Glutamate synthase [NADPH] large chain.
    
 
 0.934
bglF
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.901
xynB
Beta-xylosidase.
 
     0.813
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.727
rbsB
D-ribose-binding periplasmic protein precursor.
 
 
 0.721
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.680
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.680
sat
Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.
    
   0.634
bfmBAA
2-oxoisovalerate dehydrogenase subunit alpha.
    
 
 0.624
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.621
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.