STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppD2Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (336 aa)    
Predicted Functional Partners:
dppC2
Dipeptide transport system permease protein DppC.
 
 0.997
dppC1
Dipeptide transport system permease protein DppC.
 
 0.990
ddpC1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.990
oppC
Oligopeptide transport system permease protein OppC.
 
 0.990
ddpC2
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.990
nikB
Nickel transport system permease protein NikB.
 
 0.979
oppF2
Oligopeptide transport ATP-binding protein OppF.
 
 
0.934
dppB3
Dipeptide transport system permease protein DppB.
 
 0.913
dppB1
Dipeptide transport system permease protein DppB.
 
 0.910
ddpA1
Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.
 
 0.910
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.