STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodNSuperoxide dismutase [Ni] precursor. (130 aa)    
Predicted Functional Partners:
AXFE_26480
Helix-turn-helix protein.
  
     0.633
AXFE_25820
Hypothetical protein.
     
 0.560
AXFE_14440
Hypothetical protein.
  
     0.555
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.539
AXFE_03020
Peptidase family S51; Belongs to the peptidase S51 family.
  
     0.487
AXFE_12030
Hypothetical protein.
  
     0.436
AXFE_32130
Ferredoxin.
  
     0.421
AXFE_22300
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
     0.411
AXFE_01480
O-phthalyl amidase.
  
     0.404
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.