STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_27470Ureidoglycolate lyase. (291 aa)    
Predicted Functional Partners:
fabG10
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
  0.841
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.788
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 
  0.777
AXFE_27460
Carboxymuconolactone decarboxylase family protein.
       0.773
AXFE_00010
Putative FAD-linked oxidoreductase.
  
 
  0.766
AXFE_17320
Putative FAD-linked oxidoreductase.
  
 
  0.766
sdhB
Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.758
AXFE_12090
Succinate dehydrogenase/fumarate reductase transmembrane subunit.
   
 
  0.751
AXFE_12100
Succinate dehydrogenase/fumarate reductase transmembrane subunit.
   
 
  0.751
AXFE_02220
Putative FAD-linked oxidoreductase.
    
  0.749
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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