STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpB1Bicarbonate transport system permease protein CmpB. (277 aa)    
Predicted Functional Partners:
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 0.997
AXFE_27520
NMT1/THI5 like protein.
 
 
 0.993
cmpB2
Bicarbonate transport system permease protein CmpB.
 
  
 
0.889
rutA
Pyrimidine monooxygenase RutA.
 
 
 0.638
fgd1
F420-dependent glucose-6-phosphate dehydrogenase.
 
 
 0.607
fgd2
F420-dependent glucose-6-phosphate dehydrogenase.
  
 
 0.537
AXFE_16130
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
  
 
 0.537
AXFE_23370
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
  
 
 0.537
AXFE_31360
Methylenetetrahydromethanopterin reductase.
  
 
 0.537
thcD
Rhodocoxin reductase.
 
  
 0.516
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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