paaG2 protein (Acidithrix ferrooxidans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

paaG2

1,2-epoxyphenylacetyl-CoA isomerase. (281 aa)

Predicted Functional Partners:

fadB22

0.802

acdA1

0.794

mmgC4

0.770

pcaF1

0.763

metH

0.761

cph22

0.750

fadB21

0.739

acrC

0.734

bbsG

0.734

mmgC1

0.734

Your Current Organism:

Acidithrix ferrooxidans

NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acdA1	fadB21	AXFE_07930	AXFE_07950	acyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.748
acdA1	fadB22	AXFE_07930	AXFE_24420	acyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.590
acdA1	mmgC4	AXFE_07930	AXFE_13110	acyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.976
acdA1	paaG2	AXFE_07930	AXFE_30680	acyl-CoA dehydrogenase.	1,2-epoxyphenylacetyl-CoA isomerase.	0.794
acdA1	pcaF1	AXFE_07930	AXFE_04430	acyl-CoA dehydrogenase.	beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.557
acrC	fadB21	AXFE_00630	AXFE_07950	acryloyl-CoA reductase (NADH).	3-hydroxybutyryl-CoA dehydrogenase.	0.590
acrC	fadB22	AXFE_00630	AXFE_24420	acryloyl-CoA reductase (NADH).	3-hydroxybutyryl-CoA dehydrogenase.	0.590
acrC	paaG2	AXFE_00630	AXFE_30680	acryloyl-CoA reductase (NADH).	1,2-epoxyphenylacetyl-CoA isomerase.	0.734
acrC	pcaF1	AXFE_00630	AXFE_04430	acryloyl-CoA reductase (NADH).	beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.581
bbsG	fadB21	AXFE_03460	AXFE_07950	(R)-benzylsuccinyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.590
bbsG	fadB22	AXFE_03460	AXFE_24420	(R)-benzylsuccinyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.590
bbsG	paaG2	AXFE_03460	AXFE_30680	(R)-benzylsuccinyl-CoA dehydrogenase.	1,2-epoxyphenylacetyl-CoA isomerase.	0.734
bbsG	pcaF1	AXFE_03460	AXFE_04430	(R)-benzylsuccinyl-CoA dehydrogenase.	beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.458
cph22	paaG2	AXFE_16580	AXFE_30680	Phytochrome-like protein cph2.	1,2-epoxyphenylacetyl-CoA isomerase.	0.750
fadB21	acdA1	AXFE_07950	AXFE_07930	3-hydroxybutyryl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.748
fadB21	acrC	AXFE_07950	AXFE_00630	3-hydroxybutyryl-CoA dehydrogenase.	acryloyl-CoA reductase (NADH).	0.590
fadB21	bbsG	AXFE_07950	AXFE_03460	3-hydroxybutyryl-CoA dehydrogenase.	(R)-benzylsuccinyl-CoA dehydrogenase.	0.590
fadB21	fadB22	AXFE_07950	AXFE_24420	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.773
fadB21	mmgC1	AXFE_07950	AXFE_03510	3-hydroxybutyryl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.590
fadB21	mmgC4	AXFE_07950	AXFE_13110	3-hydroxybutyryl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.590