STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_30700Indolepyruvate ferredoxin oxidoreductase. (1153 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 0.994
gltD
Glutamate synthase [NADPH] small chain.
  
 
 0.963
hycG2
Formate hydrogenlyase subunit 7.
  
 0.963
sat
Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.
  
 
 0.953
AXFE_25270
NADH oxidase.
  
 
 0.947
AXFE_25630
Putative formate dehydrogenase.
    
 0.941
scpA2
methylmalonyl-CoA mutase.
  
 
 0.933
nqo3
NADH-quinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
 0.929
AXFE_14680
succinyl-CoA synthetase subunit beta.
 
 
 0.926
nqo9
NADH-quinone oxidoreductase subunit 9; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 0.925
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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