STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA2Copper-exporting P-type ATPase A. (667 aa)    
Predicted Functional Partners:
AXFE_31100
Hypothetical protein.
    0.984
merA
Mercuric reductase.
  
 
 0.961
copZ
Copper chaperone CopZ.
  
 
 0.919
pucA1
Putative xanthine dehydrogenase subunit A.
     
 0.517
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.502
czcD
Cadmium, cobalt and zinc/H(+)-K(+) antiporter.
 
  
 0.484
AXFE_16440
Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).
     
 0.471
csoR1
Copper-sensing transcriptional repressor CsoR.
 
  
 0.470
AXFE_28070
Cytochrome C biogenesis protein transmembrane region.
     
 0.421
AXFE_31110
Hypothetical protein.
       0.408
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.