dop protein (Acidithrix ferrooxidans) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

dop

Depupylase. (497 aa)

Predicted Functional Partners:

arc

0.963

pup

0.962

prcA2

0.890

prcB

0.884

AXFE_01210

0.584

AXFE_07050

0.575

AXFE_23780

0.524

AXFE_32130

0.512

AXFE_10620

0.451

helD

0.448

Your Current Organism:

Acidithrix ferrooxidans

NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXFE_01210	arc	AXFE_01210	AXFE_32120	Hypothetical protein.	Proteasome-associated ATPase.	0.799
AXFE_01210	dop	AXFE_01210	AXFE_32110	Hypothetical protein.	Depupylase.	0.584
AXFE_01210	prcA2	AXFE_01210	AXFE_10510	Hypothetical protein.	Proteasome subunit alpha 2; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.	0.991
AXFE_01210	prcB	AXFE_01210	AXFE_10520	Hypothetical protein.	Proteasome subunit beta precursor; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.	0.965
AXFE_01210	pup	AXFE_01210	AXFE_32100	Hypothetical protein.	Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.	0.760
AXFE_07050	arc	AXFE_07050	AXFE_32120	PD-(D/E)XK nuclease superfamily protein.	Proteasome-associated ATPase.	0.525
AXFE_07050	dop	AXFE_07050	AXFE_32110	PD-(D/E)XK nuclease superfamily protein.	Depupylase.	0.575
AXFE_10620	arc	AXFE_10620	AXFE_32120	Hypothetical protein.	Proteasome-associated ATPase.	0.477
AXFE_10620	dop	AXFE_10620	AXFE_32110	Hypothetical protein.	Depupylase.	0.451
AXFE_23780	arc	AXFE_23780	AXFE_32120	Hypothetical protein.	Proteasome-associated ATPase.	0.635
AXFE_23780	dop	AXFE_23780	AXFE_32110	Hypothetical protein.	Depupylase.	0.524
AXFE_23780	pup	AXFE_23780	AXFE_32100	Hypothetical protein.	Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.	0.523
AXFE_32130	arc	AXFE_32130	AXFE_32120	Ferredoxin.	Proteasome-associated ATPase.	0.593
AXFE_32130	dop	AXFE_32130	AXFE_32110	Ferredoxin.	Depupylase.	0.512
AXFE_32130	pup	AXFE_32130	AXFE_32100	Ferredoxin.	Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.	0.576
arc	AXFE_01210	AXFE_32120	AXFE_01210	Proteasome-associated ATPase.	Hypothetical protein.	0.799
arc	AXFE_07050	AXFE_32120	AXFE_07050	Proteasome-associated ATPase.	PD-(D/E)XK nuclease superfamily protein.	0.525
arc	AXFE_10620	AXFE_32120	AXFE_10620	Proteasome-associated ATPase.	Hypothetical protein.	0.477
arc	AXFE_23780	AXFE_32120	AXFE_23780	Proteasome-associated ATPase.	Hypothetical protein.	0.635
arc	AXFE_32130	AXFE_32120	AXFE_32130	Proteasome-associated ATPase.	Ferredoxin.	0.593