STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXFE_35680Hypothetical protein. (97 aa)    
Predicted Functional Partners:
AXFE_35690
Hypothetical protein.
   
   0.891
AXFE_14640
Helix-turn-helix protein.
   
 
 0.558
AXFE_15940
Anaerobic benzoate catabolism transcriptional regulator.
    
   0.539
AXFE_17720
Helix-turn-helix domain protein.
    
   0.539
AXFE_35460
Hypothetical protein.
    
   0.539
AXFE_15230
DNA-binding transcriptional repressor PuuR.
   
   0.433
AXFE_17680
Hypothetical protein.
   
   0.433
AXFE_21660
Anaerobic benzoate catabolism transcriptional regulator.
   
   0.433
rghR
HTH-type transcriptional repressor RghR.
   
   0.433
AXFE_26480
Helix-turn-helix protein.
   
   0.433
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.