STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pemI2Antitoxin PemI. (85 aa)    
Predicted Functional Partners:
pemK2
mRNA interferase PemK.
 
 
 0.982
pemK1
mRNA interferase PemK.
 
 
 0.925
mazF6
mRNA interferase MazF6.
  
 
 0.683
mazF51
Toxin MazF5.
  
 
 0.683
AXFE_35730
PemK-like protein.
  
 
 0.683
mazF52
Toxin MazF5.
  
 
 0.683
AXFE_09190
Hypothetical protein.
  
     0.517
AXFE_15210
Hypothetical protein.
  
     0.487
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.