STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HY36_11815Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (240 aa)    
Predicted Functional Partners:
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.812
HY36_01785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.789
HY36_11810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
HY36_14465
Glutamate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.751
HY36_00340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.750
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.730
HY36_12480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.726
HY36_01180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.713
HY36_07620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.697
HY36_05665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.694
Your Current Organism:
Hyphomonas atlantica
NCBI taxonomy Id: 1280948
Other names: H. atlantica, Hyphomonas atlantica corrig. Li et al. 2015, Hyphomonas atlanticus, Hyphomonas sp. 22II1-22F38, Hyphomonas sp. MCCC 1A09205, Hyphomonas sp. MCCC 1A09418, LMG 27916, LMG:27916, MCCC 1A09418, strain 22II1-22F38
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