STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HJA_04431OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (290 aa)    
Predicted Functional Partners:
pal
OmpA family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.746
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.681
HJA_08474
Protein TolQ; COG0811 Biopolymer transport proteins.
 
     0.606
HJA_14080
LolC/E family lipoprotein releasing system, transmembrane protein; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
 
   0.569
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.563
HJA_02740
Sensory box histidine kinase; COG2202 FOG: PAS/PAC domain.
  
  
 0.539
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
     0.538
HJA_08469
ExbD/TolR family transport energizing protein; COG0848 Biopolymer transport protein.
 
 
   0.520
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
   0.509
HJA_13595
Amidohydrolase; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
 0.504
Your Current Organism:
Hyphomonas jannaschiana
NCBI taxonomy Id: 1280952
Other names: H. jannaschiana VP2, Hyphomonas jannaschiana VP2
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