STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOC_14363Succinoglycan biosynthesis protein ExoM; COG0463 Glycosyltransferases involved in cell wall biogenesis. (297 aa)    
Predicted Functional Partners:
HOC_14383
Putative glycosyl transferase.
 
  
  0.757
HOC_14388
Putative O-antigen polymerase; COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
   
 0.688
HOC_05473
Putative diguanylate cyclase; COG2199 FOG: GGDEF domain.
  
 
 0.676
HOC_14733
COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.667
HOC_20753
COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.667
HOC_14368
FAD dependent oxidoreductase; COG0579 Predicted dehydrogenase.
       0.664
HOC_15802
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.624
HOC_15552
COG3321 Polyketide synthase modules and related proteins; overlaps another CDS with the same product name.
   
 0.593
HOC_05374
Creatininase; COG1402 Uncharacterized protein, putative amidase.
  
  
 0.555
HOC_14378
Chain length determinant family protein; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.515
Your Current Organism:
Hyphomonas oceanitis
NCBI taxonomy Id: 1280953
Other names: H. oceanitis SCH89, Hyphomonas oceanitis SCH89
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