Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| arlR_2 | walK | ShL2_01374 | ShL2_00018 | Response regulator receiver. | Multi-sensor signal transduction histidine kinase, WalK. | 0.837 |
| fmtC | graR | ShL2_01426 | ShL2_02084 | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Winged helix family two component transcriptional regulator. | 0.843 |
| fmtC | vraS | ShL2_01426 | ShL2_00957 | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Integral membrane sensor signal transduction histidine kinase. | 0.602 |
| fmtC | walK | ShL2_01426 | ShL2_00018 | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Multi-sensor signal transduction histidine kinase, WalK. | 0.826 |
| fmtC | walR | ShL2_01426 | ShL2_00017 | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Transcriptional regulator WalR. | 0.439 |
| fmtC | yycH | ShL2_01426 | ShL2_00019 | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Two-component regulator YycH. | 0.599 |
| graR | fmtC | ShL2_02084 | ShL2_01426 | Winged helix family two component transcriptional regulator. | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.843 |
| graR | vraS | ShL2_02084 | ShL2_00957 | Winged helix family two component transcriptional regulator. | Integral membrane sensor signal transduction histidine kinase. | 0.642 |
| graR | walK | ShL2_02084 | ShL2_00018 | Winged helix family two component transcriptional regulator. | Multi-sensor signal transduction histidine kinase, WalK. | 0.797 |
| ompR | walK | ShL2_01117 | ShL2_00018 | Response regulator OmpR. | Multi-sensor signal transduction histidine kinase, WalK. | 0.853 |
| srrA_2 | walK | ShL2_01309 | ShL2_00018 | Winged helix family two component transcriptional regulator. | Multi-sensor signal transduction histidine kinase, WalK. | 0.821 |
| vraS | fmtC | ShL2_00957 | ShL2_01426 | Integral membrane sensor signal transduction histidine kinase. | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.602 |
| vraS | graR | ShL2_00957 | ShL2_02084 | Integral membrane sensor signal transduction histidine kinase. | Winged helix family two component transcriptional regulator. | 0.642 |
| vraS | walK | ShL2_00957 | ShL2_00018 | Integral membrane sensor signal transduction histidine kinase. | Multi-sensor signal transduction histidine kinase, WalK. | 0.750 |
| walK | arlR_2 | ShL2_00018 | ShL2_01374 | Multi-sensor signal transduction histidine kinase, WalK. | Response regulator receiver. | 0.837 |
| walK | fmtC | ShL2_00018 | ShL2_01426 | Multi-sensor signal transduction histidine kinase, WalK. | Oxacillin resistance-related FmtC protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.826 |
| walK | graR | ShL2_00018 | ShL2_02084 | Multi-sensor signal transduction histidine kinase, WalK. | Winged helix family two component transcriptional regulator. | 0.797 |
| walK | ompR | ShL2_00018 | ShL2_01117 | Multi-sensor signal transduction histidine kinase, WalK. | Response regulator OmpR. | 0.853 |
| walK | srrA_2 | ShL2_00018 | ShL2_01309 | Multi-sensor signal transduction histidine kinase, WalK. | Winged helix family two component transcriptional regulator. | 0.821 |
| walK | vraS | ShL2_00018 | ShL2_00957 | Multi-sensor signal transduction histidine kinase, WalK. | Integral membrane sensor signal transduction histidine kinase. | 0.750 |
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