Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKC75267.1 | yfbB_1 | ShL2_00387 | ShL2_00466 | Thymidylate kinase. | acyl-CoA thioester hydrolase. | 0.465 |
| AKC75342.1 | AKC75344.1 | ShL2_00465 | ShL2_00467 | GTP pyrophosphokinase. | MerR family transcriptional regulator. | 0.523 |
| AKC75342.1 | yfbB_1 | ShL2_00465 | ShL2_00466 | GTP pyrophosphokinase. | acyl-CoA thioester hydrolase. | 0.481 |
| AKC75344.1 | AKC75342.1 | ShL2_00467 | ShL2_00465 | MerR family transcriptional regulator. | GTP pyrophosphokinase. | 0.523 |
| AKC75344.1 | yfbB_1 | ShL2_00467 | ShL2_00466 | MerR family transcriptional regulator. | acyl-CoA thioester hydrolase. | 0.536 |
| acpP | atpG | ShL2_01614 | ShL2_00822 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.594 |
| acpP | yfbB_1 | ShL2_01614 | ShL2_00466 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | acyl-CoA thioester hydrolase. | 0.524 |
| atpB_2 | atpG | ShL2_00823 | ShL2_00822 | ATP synthase subunit beta, AtpB; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpB_2 | cdr | ShL2_00823 | ShL2_01842 | ATP synthase subunit beta, AtpB; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Coenzyme A disulfide reductase; Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide; Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family. | 0.565 |
| atpB_2 | yfbB_1 | ShL2_00823 | ShL2_00466 | ATP synthase subunit beta, AtpB; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | acyl-CoA thioester hydrolase. | 0.408 |
| atpG | acpP | ShL2_00822 | ShL2_01614 | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.594 |
| atpG | atpB_2 | ShL2_00822 | ShL2_00823 | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | ATP synthase subunit beta, AtpB; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpG | cdr | ShL2_00822 | ShL2_01842 | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | Coenzyme A disulfide reductase; Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide; Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family. | 0.521 |
| atpG | dltC | ShL2_00822 | ShL2_01879 | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | D-alanine-activating enzyme/D-alanine-D-alanyl, dltC protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.594 |
| atpG | yfbB_1 | ShL2_00822 | ShL2_00466 | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | acyl-CoA thioester hydrolase. | 0.403 |
| caiA | yfbB_1 | ShL2_00665 | ShL2_00466 | acyl-CoA dehydrogenase. | acyl-CoA thioester hydrolase. | 0.552 |
| cdr | atpB_2 | ShL2_01842 | ShL2_00823 | Coenzyme A disulfide reductase; Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide; Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family. | ATP synthase subunit beta, AtpB; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.565 |
| cdr | atpG | ShL2_01842 | ShL2_00822 | Coenzyme A disulfide reductase; Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide; Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family. | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.521 |
| cdr | yfbB_1 | ShL2_01842 | ShL2_00466 | Coenzyme A disulfide reductase; Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide; Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family. | acyl-CoA thioester hydrolase. | 0.420 |
| dltC | atpG | ShL2_01879 | ShL2_00822 | D-alanine-activating enzyme/D-alanine-D-alanyl, dltC protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | ATP synthase subunit gamma, AtpG; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.594 |
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