Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKC75725.1 | rsbU | ShL2_00859 | ShL2_00854 | Hypothetical protein; Belongs to the SprT family. | Sigma factor sigB regulation protein. | 0.702 |
| AKC75725.1 | rsbV | ShL2_00859 | ShL2_00855 | Hypothetical protein; Belongs to the SprT family. | anti-sigma-B factor, antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.748 |
| AKC75725.1 | rsbW | ShL2_00859 | ShL2_00856 | Hypothetical protein; Belongs to the SprT family. | anti-sigma-B factor, serine-protein kinase; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.748 |
| AKC75725.1 | sigB | ShL2_00859 | ShL2_00857 | Hypothetical protein; Belongs to the SprT family. | RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.748 |
| AKC75725.1 | tex | ShL2_00859 | ShL2_00858 | Hypothetical protein; Belongs to the SprT family. | Transcription accessory protein (S1 RNA binding). | 0.891 |
| AKC75762.1 | rsbV | ShL2_00896 | ShL2_00855 | Transposase for IS256. | anti-sigma-B factor, antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.539 |
| alr | mazE | ShL2_00851 | ShL2_00852 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Antitoxin MazE. | 0.817 |
| alr | mazF | ShL2_00851 | ShL2_00853 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system. | 0.845 |
| alr | rsbU | ShL2_00851 | ShL2_00854 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Sigma factor sigB regulation protein. | 0.718 |
| alr | rsbV | ShL2_00851 | ShL2_00855 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | anti-sigma-B factor, antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.632 |
| alr | rsbW | ShL2_00851 | ShL2_00856 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | anti-sigma-B factor, serine-protein kinase; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.716 |
| alr | sigB | ShL2_00851 | ShL2_00857 | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.643 |
| mazE | alr | ShL2_00852 | ShL2_00851 | Antitoxin MazE. | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.817 |
| mazE | mazF | ShL2_00852 | ShL2_00853 | Antitoxin MazE. | Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system. | 0.983 |
| mazE | rsbU | ShL2_00852 | ShL2_00854 | Antitoxin MazE. | Sigma factor sigB regulation protein. | 0.777 |
| mazE | rsbV | ShL2_00852 | ShL2_00855 | Antitoxin MazE. | anti-sigma-B factor, antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.699 |
| mazE | rsbW | ShL2_00852 | ShL2_00856 | Antitoxin MazE. | anti-sigma-B factor, serine-protein kinase; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.716 |
| mazE | sigB | ShL2_00852 | ShL2_00857 | Antitoxin MazE. | RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.826 |
| mazF | alr | ShL2_00853 | ShL2_00851 | Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system. | Alanine racemase 1; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.845 |
| mazF | mazE | ShL2_00853 | ShL2_00852 | Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system. | Antitoxin MazE. | 0.983 |
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