Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKC76048.1 | AKC76049.1 | ShL2_01185 | ShL2_01186 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein; Belongs to the UPF0473 family. | 0.941 |
| AKC76048.1 | AKC76050.1 | ShL2_01185 | ShL2_01187 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | caffeoyl-CoA O-methyltransferase. | 0.603 |
| AKC76048.1 | AKC76051.1 | ShL2_01185 | ShL2_01188 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Peptidase U32 family protein. | 0.519 |
| AKC76048.1 | AKC76052.1 | ShL2_01185 | ShL2_01189 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Peptidase U32 family protein. | 0.490 |
| AKC76048.1 | greA | ShL2_01185 | ShL2_01191 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.459 |
| AKC76048.1 | udk | ShL2_01185 | ShL2_01190 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Uridine kinase. | 0.488 |
| AKC76049.1 | AKC76048.1 | ShL2_01186 | ShL2_01185 | Hypothetical protein; Belongs to the UPF0473 family. | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.941 |
| AKC76049.1 | AKC76050.1 | ShL2_01186 | ShL2_01187 | Hypothetical protein; Belongs to the UPF0473 family. | caffeoyl-CoA O-methyltransferase. | 0.715 |
| AKC76049.1 | AKC76051.1 | ShL2_01186 | ShL2_01188 | Hypothetical protein; Belongs to the UPF0473 family. | Peptidase U32 family protein. | 0.709 |
| AKC76049.1 | AKC76052.1 | ShL2_01186 | ShL2_01189 | Hypothetical protein; Belongs to the UPF0473 family. | Peptidase U32 family protein. | 0.573 |
| AKC76049.1 | greA | ShL2_01186 | ShL2_01191 | Hypothetical protein; Belongs to the UPF0473 family. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.471 |
| AKC76049.1 | udk | ShL2_01186 | ShL2_01190 | Hypothetical protein; Belongs to the UPF0473 family. | Uridine kinase. | 0.503 |
| AKC76050.1 | AKC76048.1 | ShL2_01187 | ShL2_01185 | caffeoyl-CoA O-methyltransferase. | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.603 |
| AKC76050.1 | AKC76049.1 | ShL2_01187 | ShL2_01186 | caffeoyl-CoA O-methyltransferase. | Hypothetical protein; Belongs to the UPF0473 family. | 0.715 |
| AKC76050.1 | AKC76051.1 | ShL2_01187 | ShL2_01188 | caffeoyl-CoA O-methyltransferase. | Peptidase U32 family protein. | 0.935 |
| AKC76050.1 | AKC76052.1 | ShL2_01187 | ShL2_01189 | caffeoyl-CoA O-methyltransferase. | Peptidase U32 family protein. | 0.927 |
| AKC76050.1 | AKC76055.1 | ShL2_01187 | ShL2_01192 | caffeoyl-CoA O-methyltransferase. | Allophanate hydrolase subunit 1. | 0.587 |
| AKC76050.1 | accB_1 | ShL2_01187 | ShL2_01194 | caffeoyl-CoA O-methyltransferase. | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, Acc_B1; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.587 |
| AKC76050.1 | ahs2 | ShL2_01187 | ShL2_01193 | caffeoyl-CoA O-methyltransferase. | Allophanate hydrolase subunit 2. | 0.587 |
| AKC76050.1 | greA | ShL2_01187 | ShL2_01191 | caffeoyl-CoA O-methyltransferase. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.796 |
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