Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKC76186.1 | AKC76188.1 | ShL2_01323 | ShL2_01325 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Heptaprenyl diphosphate synthase subunit 1. | 0.587 |
| AKC76186.1 | engA | ShL2_01323 | ShL2_01321 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.795 |
| AKC76186.1 | gerCC | ShL2_01323 | ShL2_01327 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Iron (Fe3+) ABC superfamily ATP binding cassettetransporter, membrane protein; Belongs to the FPP/GGPP synthase family. | 0.587 |
| AKC76186.1 | gpsA | ShL2_01323 | ShL2_01322 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.768 |
| AKC76186.1 | menG | ShL2_01323 | ShL2_01326 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 2-heptaprenyl-1,4-naphthoquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.612 |
| AKC76186.1 | ndk | ShL2_01323 | ShL2_01328 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Nucleoside diphosphate kinase superfamily protein; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.604 |
| AKC76186.1 | rplL | ShL2_01323 | ShL2_02254 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.598 |
| AKC76186.1 | rpsA | ShL2_01323 | ShL2_01320 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S1. | 0.634 |
| AKC76186.1 | rpsO | ShL2_01323 | ShL2_01574 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.584 |
| AKC76186.1 | rpsT | ShL2_01323 | ShL2_01213 | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.610 |
| AKC76188.1 | AKC76186.1 | ShL2_01325 | ShL2_01323 | Heptaprenyl diphosphate synthase subunit 1. | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.587 |
| AKC76188.1 | gerCC | ShL2_01325 | ShL2_01327 | Heptaprenyl diphosphate synthase subunit 1. | Iron (Fe3+) ABC superfamily ATP binding cassettetransporter, membrane protein; Belongs to the FPP/GGPP synthase family. | 0.999 |
| AKC76188.1 | gpsA | ShL2_01325 | ShL2_01322 | Heptaprenyl diphosphate synthase subunit 1. | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.454 |
| AKC76188.1 | menG | ShL2_01325 | ShL2_01326 | Heptaprenyl diphosphate synthase subunit 1. | 2-heptaprenyl-1,4-naphthoquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.872 |
| AKC76188.1 | ndk | ShL2_01325 | ShL2_01328 | Heptaprenyl diphosphate synthase subunit 1. | Nucleoside diphosphate kinase superfamily protein; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.732 |
| engA | AKC76186.1 | ShL2_01321 | ShL2_01323 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.795 |
| engA | gpsA | ShL2_01321 | ShL2_01322 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.990 |
| engA | rpsA | ShL2_01321 | ShL2_01320 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 30S ribosomal protein S1. | 0.799 |
| gerCC | AKC76186.1 | ShL2_01327 | ShL2_01323 | Iron (Fe3+) ABC superfamily ATP binding cassettetransporter, membrane protein; Belongs to the FPP/GGPP synthase family. | Histone family protein DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.587 |
| gerCC | AKC76188.1 | ShL2_01327 | ShL2_01325 | Iron (Fe3+) ABC superfamily ATP binding cassettetransporter, membrane protein; Belongs to the FPP/GGPP synthase family. | Heptaprenyl diphosphate synthase subunit 1. | 0.999 |
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