STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKC76854.1Diguanylate cyclase GGDEF domain protein. (356 aa)    
Predicted Functional Partners:
yjjP_1
Inner membrane protein YjjP.
       0.755
AKC76856.1
Hypothetical protein.
  
    0.749
pepT
M20 family peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.730
AKC76853.1
Glycosyl transferase family protein.
  
    0.721
ompR
Response regulator OmpR.
 
  
 0.702
rsbW
anti-sigma-B factor, serine-protein kinase; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
 
 0.641
rsbU
Sigma factor sigB regulation protein.
  
  
 0.509
glnR
MerR family transcriptional regulator.
   
 
 0.453
rsbV
anti-sigma-B factor, antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  
 0.429
AKC76981.1
Hypothetical protein.
  
    0.426
Your Current Organism:
Staphylococcus haemolyticus
NCBI taxonomy Id: 1283
Other names: ATCC 29970, CCM 2737, CCUG 7323, CIP 81.56, DSM 20263, JCM 2416, LMG 13349, LMG:13349, NCTC 11042, NRRL B-14755, S. haemolyticus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.