STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000527035_03223Unannotated protein. (256 aa)    
Predicted Functional Partners:
GCA_000527035_01929
Unannotated protein.
  
 
 0.992
GCA_000527035_03221
Unannotated protein.
 
 0.991
GCA_000527035_03222
Unannotated protein.
 
 0.990
GCA_000527035_02342
Unannotated protein.
 
 0.968
GCA_000527035_02343
Unannotated protein.
 
 0.965
GCA_000527035_02108
Unannotated protein.
   
 
  0.684
GCA_000527035_03026
Unannotated protein.
    
  0.643
GCA_000527035_00179
Unannotated protein.
   
 
  0.537
GCA_000527035_01980
Unannotated protein.
   
 
  0.537
GCA_000527035_02761
Unannotated protein.
   
 
  0.537
Your Current Organism:
Tolumonas lignilytica
NCBI taxonomy Id: 1283284
Other names: ATCC TSD-11, DSM 100457, T. lignilytica, Tolumonas lignilytica corrig. Billings et al. 2016, Tolumonas lignolytica, Tolumonas sp. BRL6-1, strain BRL6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.