S40285_06687 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_06687

Glutamine amidotransferase type-1 domain-containing protein. (456 aa)

Predicted Functional Partners:

S40285_00854

0.997

S40285_00568

0.949

S40285_04638

0.948

S40285_05579

0.927

S40285_03163

0.919

S40285_05499

0.919

S40285_07812

0.916

S40285_08009

0.916

S40285_01395

0.916

S40285_03724

0.916

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_00568	S40285_00854	A0A084R2S0	A0A084QJI4	Amidophosphoribosyltransferase.	Uncharacterized protein.	0.957
S40285_00568	S40285_01395	A0A084R2S0	A0A084QLD7	Amidophosphoribosyltransferase.	N-acetyltransferase domain-containing protein.	0.538
S40285_00568	S40285_03163	A0A084R2S0	A0A084QI41	Amidophosphoribosyltransferase.	DHO_dh domain-containing protein.	0.615
S40285_00568	S40285_03724	A0A084R2S0	A0A084QPZ9	Amidophosphoribosyltransferase.	Uncharacterized protein.	0.538
S40285_00568	S40285_04638	A0A084R2S0	A0A084QZQ3	Amidophosphoribosyltransferase.	Uncharacterized protein.	0.845
S40285_00568	S40285_05499	A0A084R2S0	A0A084QJ51	Amidophosphoribosyltransferase.	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.	0.615
S40285_00568	S40285_05579	A0A084R2S0	A0A084QEX2	Amidophosphoribosyltransferase.	Uncharacterized protein.	0.958
S40285_00568	S40285_06687	A0A084R2S0	A0A084QA29	Amidophosphoribosyltransferase.	Glutamine amidotransferase type-1 domain-containing protein.	0.949
S40285_00568	S40285_07812	A0A084R2S0	A0A084Q9E1	Amidophosphoribosyltransferase.	Semialdhyde_dh domain-containing protein.	0.538
S40285_00568	S40285_08009	A0A084R2S0	A0A084QAR1	Amidophosphoribosyltransferase.	N-acetyltransferase domain-containing protein.	0.538
S40285_00854	S40285_00568	A0A084QJI4	A0A084R2S0	Uncharacterized protein.	Amidophosphoribosyltransferase.	0.957
S40285_00854	S40285_01395	A0A084QJI4	A0A084QLD7	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.916
S40285_00854	S40285_03163	A0A084QJI4	A0A084QI41	Uncharacterized protein.	DHO_dh domain-containing protein.	0.954
S40285_00854	S40285_03724	A0A084QJI4	A0A084QPZ9	Uncharacterized protein.	Uncharacterized protein.	0.916
S40285_00854	S40285_04638	A0A084QJI4	A0A084QZQ3	Uncharacterized protein.	Uncharacterized protein.	0.995
S40285_00854	S40285_05499	A0A084QJI4	A0A084QJ51	Uncharacterized protein.	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.	0.919
S40285_00854	S40285_05579	A0A084QJI4	A0A084QEX2	Uncharacterized protein.	Uncharacterized protein.	0.849
S40285_00854	S40285_06687	A0A084QJI4	A0A084QA29	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.997
S40285_00854	S40285_07812	A0A084QJI4	A0A084Q9E1	Uncharacterized protein.	Semialdhyde_dh domain-containing protein.	0.916
S40285_00854	S40285_08009	A0A084QJI4	A0A084QAR1	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.916