S40285_03987 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_03987

Rhodanese domain-containing protein. (219 aa)

Predicted Functional Partners:

S40285_05872

0.926

S40285_05696

0.919

S40285_09218

0.916

S40285_05368

0.910

S40285_07605

0.910

cnxH

0.907

S40285_01318

0.906

S40285_02645

0.903

S40285_05034

0.901

S40285_04571

0.899

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_01318	S40285_02645	A0A084QQZ2	A0A084QXJ6	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
S40285_01318	S40285_03987	A0A084QQZ2	A0A084QC64	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Rhodanese domain-containing protein.	0.906
S40285_01318	S40285_04571	A0A084QQZ2	A0A084QKT5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
S40285_01318	S40285_05696	A0A084QQZ2	A0A084QF16	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.985
S40285_01318	S40285_05872	A0A084QQZ2	A0A084QBM3	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
S40285_02645	S40285_01318	A0A084QXJ6	A0A084QQZ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.998
S40285_02645	S40285_03987	A0A084QXJ6	A0A084QC64	Uncharacterized protein.	Rhodanese domain-containing protein.	0.903
S40285_02645	S40285_04571	A0A084QXJ6	A0A084QKT5	Uncharacterized protein.	Uncharacterized protein.	0.999
S40285_02645	S40285_05696	A0A084QXJ6	A0A084QF16	Uncharacterized protein.	Uncharacterized protein.	0.993
S40285_02645	S40285_05872	A0A084QXJ6	A0A084QBM3	Uncharacterized protein.	Uncharacterized protein.	0.997
S40285_03987	S40285_01318	A0A084QC64	A0A084QQZ2	Rhodanese domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.906
S40285_03987	S40285_02645	A0A084QC64	A0A084QXJ6	Rhodanese domain-containing protein.	Uncharacterized protein.	0.903
S40285_03987	S40285_04571	A0A084QC64	A0A084QKT5	Rhodanese domain-containing protein.	Uncharacterized protein.	0.899
S40285_03987	S40285_05034	A0A084QC64	A0A084QFK2	Rhodanese domain-containing protein.	Flavodoxin-like domain-containing protein.	0.901
S40285_03987	S40285_05368	A0A084QC64	A0A084QPE3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.910
S40285_03987	S40285_05696	A0A084QC64	A0A084QF16	Rhodanese domain-containing protein.	Uncharacterized protein.	0.919
S40285_03987	S40285_05872	A0A084QC64	A0A084QBM3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.926
S40285_03987	S40285_07605	A0A084QC64	A0A084QZF3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.910
S40285_03987	S40285_09218	A0A084QC64	A0A084QWU3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.916
S40285_03987	cnxH	A0A084QC64	A0A084QLD3	Rhodanese domain-containing protein.	Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.	0.907

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

27

PPI enrichment p-value:

8.74e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 116

1.57

3.2

1.96e-12

GO:0010467

Gene expression

11 of 211

1.35

2.4

1.96e-12

GO:0009059

Macromolecule biosynthetic process

11 of 268

1.25

2.03

6.02e-12

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 404

1.07

1.44

3.38e-10

GO:0044238

Primary metabolic process

11 of 1331

0.55

0.48

6.74e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 57

1.88

5.03

1.42e-15

GO:0019843

rRNA binding

6 of 41

1.8

2.88

8.24e-08

GO:0003676

Nucleic acid binding

7 of 522

0.76

0.54

0.0075

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 60

1.85

5.04

3.86e-16

GO:0044391

Ribosomal subunit

3 of 14

1.96

1.89

0.00014

GO:0015935

Small ribosomal subunit

2 of 6

2.15

1.39

0.0023

GO:0032991

Protein-containing complex

4 of 227

0.88

0.55

0.0189

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2421

rRNA-binding, and Structural constituent of ribosome

10 of 41

2.02

6.12

1.91e-17

CL:2419

Structural constituent of ribosome

11 of 58

1.91

5.73

2.92e-18

CL:2479

rRNA-binding, and RNA polymerase

6 of 12

2.33

4.99

4.39e-11

CL:2422

rRNA-binding, and Elongation factor G C-terminus

4 of 29

1.77

1.95

4.65e-05

CL:2481

Ribosomal protein S5 domain 2-type fold, subgroup, and Structural constituent of ribosome

2 of 6

2.15

1.08

0.0094

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 59

1.86

5.09

3.29e-16

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

9 of 47

1.91

4.87

4.06e-14

GOCC:0015935

Small ribosomal subunit

4 of 12

2.15

2.79

2.27e-06

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 10

1.93

1.03

0.0102

GOCC:0032991

Protein-containing complex

6 of 589

0.64

0.4

0.0296

GOCC:0005622

Intracellular

11 of 1652

0.46

0.39

0.00036

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 58

1.87

5.1

4.47e-16

KW-0699

rRNA-binding

6 of 38

1.83

3.17

1.46e-08

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About