S40285_03371 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_03371

Uncharacterized protein. (633 aa)

Predicted Functional Partners:

S40285_06379

0.819

S40285_05368

0.814

S40285_07605

0.814

S40285_00665

0.682

S40285_04972

0.646

S40285_02180

0.643

S40285_05511

0.640

S40285_05874

0.640

S40285_04753

0.640

S40285_06508

0.640

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_00665	S40285_02180	A0A084R2H2	A0A084QB53	DRIM domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
S40285_00665	S40285_03371	A0A084R2H2	A0A084QQA5	DRIM domain-containing protein.	Uncharacterized protein.	0.682
S40285_00665	S40285_04753	A0A084R2H2	A0A084QGP4	DRIM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
S40285_00665	S40285_04972	A0A084R2H2	A0A084QRU6	DRIM domain-containing protein.	Utp12 domain-containing protein.	0.993
S40285_00665	S40285_05511	A0A084R2H2	A0A084QBD3	DRIM domain-containing protein.	PINc domain-containing protein.	0.999
S40285_00665	S40285_05874	A0A084R2H2	A0A084QBJ7	DRIM domain-containing protein.	Uncharacterized protein.	0.998
S40285_00665	S40285_06508	A0A084R2H2	A0A084QMG7	DRIM domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
S40285_02180	S40285_00665	A0A084QB53	A0A084R2H2	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	DRIM domain-containing protein.	0.998
S40285_02180	S40285_03371	A0A084QB53	A0A084QQA5	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.643
S40285_02180	S40285_04753	A0A084QB53	A0A084QGP4	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
S40285_02180	S40285_04972	A0A084QB53	A0A084QRU6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Utp12 domain-containing protein.	0.970
S40285_02180	S40285_05511	A0A084QB53	A0A084QBD3	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	PINc domain-containing protein.	0.998
S40285_02180	S40285_05874	A0A084QB53	A0A084QBJ7	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.998
S40285_02180	S40285_06508	A0A084QB53	A0A084QMG7	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
S40285_03371	S40285_00665	A0A084QQA5	A0A084R2H2	Uncharacterized protein.	DRIM domain-containing protein.	0.682
S40285_03371	S40285_02180	A0A084QQA5	A0A084QB53	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.643
S40285_03371	S40285_04753	A0A084QQA5	A0A084QGP4	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.640
S40285_03371	S40285_04972	A0A084QQA5	A0A084QRU6	Uncharacterized protein.	Utp12 domain-containing protein.	0.646
S40285_03371	S40285_05368	A0A084QQA5	A0A084QPE3	Uncharacterized protein.	Uncharacterized protein.	0.814
S40285_03371	S40285_05511	A0A084QQA5	A0A084QBD3	Uncharacterized protein.	PINc domain-containing protein.	0.640