S40285_08527 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_08527

Uncharacterized protein. (745 aa)

Predicted Functional Partners:

S40285_05368

0.841

S40285_07605

0.841

S40285_06187

0.631

S40285_03744

0.555

S40285_02801

0.533

S40285_04358

0.533

S40285_01001

0.533

S40285_04544

0.519

S40285_01632

0.519

S40285_00306

0.519

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_00306	S40285_01632	A0A084QHV6	A0A084QDZ4	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	FAD-binding FR-type domain-containing protein.	0.789
S40285_00306	S40285_05368	A0A084QHV6	A0A084QPE3	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	Uncharacterized protein.	0.854
S40285_00306	S40285_06187	A0A084QHV6	A0A084QA72	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	Cytochrome b5 heme-binding domain-containing protein.	0.624
S40285_00306	S40285_07605	A0A084QHV6	A0A084QZF3	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	Uncharacterized protein.	0.854
S40285_00306	S40285_08527	A0A084QHV6	A0A084QR61	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	Uncharacterized protein.	0.519
S40285_01001	S40285_05368	A0A084QUU8	A0A084QPE3	MOSC domain-containing protein.	Uncharacterized protein.	0.982
S40285_01001	S40285_06187	A0A084QUU8	A0A084QA72	MOSC domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.978
S40285_01001	S40285_07605	A0A084QUU8	A0A084QZF3	MOSC domain-containing protein.	Uncharacterized protein.	0.982
S40285_01001	S40285_08527	A0A084QUU8	A0A084QR61	MOSC domain-containing protein.	Uncharacterized protein.	0.533
S40285_01632	S40285_00306	A0A084QDZ4	A0A084QHV6	FAD-binding FR-type domain-containing protein.	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.789
S40285_01632	S40285_05368	A0A084QDZ4	A0A084QPE3	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.854
S40285_01632	S40285_06187	A0A084QDZ4	A0A084QA72	FAD-binding FR-type domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.549
S40285_01632	S40285_07605	A0A084QDZ4	A0A084QZF3	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.854
S40285_01632	S40285_08527	A0A084QDZ4	A0A084QR61	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.519
S40285_02801	S40285_05368	A0A084QDA8	A0A084QPE3	MOSC domain-containing protein.	Uncharacterized protein.	0.982
S40285_02801	S40285_06187	A0A084QDA8	A0A084QA72	MOSC domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.978
S40285_02801	S40285_07605	A0A084QDA8	A0A084QZF3	MOSC domain-containing protein.	Uncharacterized protein.	0.982
S40285_02801	S40285_08527	A0A084QDA8	A0A084QR61	MOSC domain-containing protein.	Uncharacterized protein.	0.533
S40285_03744	S40285_04358	A0A084QIY9	A0A084QNP2	TPR_REGION domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.821
S40285_03744	S40285_05368	A0A084QIY9	A0A084QPE3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.556