S40285_04094 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_04094

IFRD domain-containing protein. (463 aa)

Predicted Functional Partners:

S40285_03989

0.955

S40285_00322

0.899

RPS0

0.892

S40285_02180

0.888

S40285_04562

0.888

S40285_04347

0.888

S40285_04753

0.887

S40285_00799

0.887

S40285_03355

0.887

S40285_01982

0.886

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS0	S40285_00322	A0A084QAB5	A0A084QHX2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Ribosomal_L2_C domain-containing protein.	0.998
RPS0	S40285_00799	A0A084QAB5	A0A084QJS3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.998
RPS0	S40285_01982	A0A084QAB5	A0A084QIG2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.998
RPS0	S40285_02180	A0A084QAB5	A0A084QB53	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
RPS0	S40285_03355	A0A084QAB5	A0A084QQD8	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
RPS0	S40285_03989	A0A084QAB5	A0A084QC92	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.999
RPS0	S40285_04094	A0A084QAB5	A0A084QVA7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	IFRD domain-containing protein.	0.892
RPS0	S40285_04347	A0A084QAB5	A0A084QNR9	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
RPS0	S40285_04562	A0A084QAB5	A0A084QKS6	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
RPS0	S40285_04753	A0A084QAB5	A0A084QGP4	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
S40285_00322	RPS0	A0A084QHX2	A0A084QAB5	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.998
S40285_00322	S40285_00799	A0A084QHX2	A0A084QJS3	Ribosomal_L2_C domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
S40285_00322	S40285_01982	A0A084QHX2	A0A084QIG2	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
S40285_00322	S40285_02180	A0A084QHX2	A0A084QB53	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
S40285_00322	S40285_03355	A0A084QHX2	A0A084QQD8	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
S40285_00322	S40285_03989	A0A084QHX2	A0A084QC92	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
S40285_00322	S40285_04094	A0A084QHX2	A0A084QVA7	Ribosomal_L2_C domain-containing protein.	IFRD domain-containing protein.	0.899
S40285_00322	S40285_04347	A0A084QHX2	A0A084QNR9	Ribosomal_L2_C domain-containing protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
S40285_00322	S40285_04562	A0A084QHX2	A0A084QKS6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
S40285_00322	S40285_04753	A0A084QHX2	A0A084QGP4	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999