S40285_05671 protein (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S40285_05671

Uncharacterized protein. (453 aa)

Predicted Functional Partners:

S40285_06406

0.818

S40285_08263

0.796

S40285_08870

0.794

S40285_03989

0.698

S40285_05530

0.680

S40285_01078

0.675

S40285_01077

0.675

S40285_04298

0.675

S40285_02648

0.664

S40285_04607

0.656

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_01077	S40285_02648	A0A084QKC5	A0A084QXM2	MPN domain-containing protein.	Uncharacterized protein.	0.470
S40285_01077	S40285_03989	A0A084QKC5	A0A084QC92	MPN domain-containing protein.	Uncharacterized protein.	0.949
S40285_01077	S40285_05671	A0A084QKC5	A0A084QZW4	MPN domain-containing protein.	Uncharacterized protein.	0.675
S40285_01077	S40285_06406	A0A084QKC5	A0A084QEM8	MPN domain-containing protein.	Uncharacterized protein.	0.675
S40285_01077	S40285_08263	A0A084QKC5	A0A084R209	MPN domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.675
S40285_01078	S40285_02648	A0A084QKB8	A0A084QXM2	Uncharacterized protein.	Uncharacterized protein.	0.470
S40285_01078	S40285_03989	A0A084QKB8	A0A084QC92	Uncharacterized protein.	Uncharacterized protein.	0.949
S40285_01078	S40285_05671	A0A084QKB8	A0A084QZW4	Uncharacterized protein.	Uncharacterized protein.	0.675
S40285_01078	S40285_06406	A0A084QKB8	A0A084QEM8	Uncharacterized protein.	Uncharacterized protein.	0.675
S40285_01078	S40285_08263	A0A084QKB8	A0A084R209	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.675
S40285_02648	S40285_01077	A0A084QXM2	A0A084QKC5	Uncharacterized protein.	MPN domain-containing protein.	0.470
S40285_02648	S40285_01078	A0A084QXM2	A0A084QKB8	Uncharacterized protein.	Uncharacterized protein.	0.470
S40285_02648	S40285_03989	A0A084QXM2	A0A084QC92	Uncharacterized protein.	Uncharacterized protein.	0.647
S40285_02648	S40285_04607	A0A084QXM2	A0A084QZQ6	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.497
S40285_02648	S40285_05671	A0A084QXM2	A0A084QZW4	Uncharacterized protein.	Uncharacterized protein.	0.664
S40285_02648	S40285_06406	A0A084QXM2	A0A084QEM8	Uncharacterized protein.	Uncharacterized protein.	0.664
S40285_02648	S40285_08263	A0A084QXM2	A0A084R209	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.664
S40285_03989	S40285_01077	A0A084QC92	A0A084QKC5	Uncharacterized protein.	MPN domain-containing protein.	0.949
S40285_03989	S40285_01078	A0A084QC92	A0A084QKB8	Uncharacterized protein.	Uncharacterized protein.	0.949
S40285_03989	S40285_02648	A0A084QC92	A0A084QXM2	Uncharacterized protein.	Uncharacterized protein.	0.647