Y956_03834 protein (Nipponia nippon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Y956_03834

Gamma-aminobutyric acid type B receptor subunit 1. (779 aa)

Predicted Functional Partners:

GNB5

0.667

GNG13

0.629

GNB4

0.621

GNG2

0.611

GNG4

0.611

KCNJ4

0.611

GNG5

0.609

GPSM2

0.605

GNG10

0.605

GNGT2

0.601

Your Current Organism:

Nipponia nippon

NCBI taxonomy Id: 128390
Other names: Ibis nippon, N. nippon, crested ibis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB4	GNB5	A0A091WXD3	A0A091VJK9	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit beta-5.	0.457
GNB4	GNG10	A0A091WXD3	A0A091VT99	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	0.842
GNB4	GNG13	A0A091WXD3	A0A091VA21	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.891
GNB4	GNG2	A0A091WXD3	A0A091VRH7	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.867
GNB4	GNG4	A0A091WXD3	A0A091VVG2	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.867
GNB4	GNG5	A0A091WXD3	A0A091WFF5	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.	0.855
GNB4	GNGT2	A0A091WXD3	A0A091V0Y4	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.850
GNB4	GPSM2	A0A091WXD3	A0A091VLI9	Guanine nucleotide-binding protein subunit beta-4.	G-protein-signaling modulator 2.	0.445
GNB4	KCNJ4	A0A091WXD3	A0A091VZV1	Guanine nucleotide-binding protein subunit beta-4.	Inward rectifier potassium channel 4.	0.519
GNB4	Y956_03834	A0A091WXD3	A0A091V904	Guanine nucleotide-binding protein subunit beta-4.	Gamma-aminobutyric acid type B receptor subunit 1.	0.621
GNB5	GNB4	A0A091VJK9	A0A091WXD3	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein subunit beta-4.	0.457
GNB5	GNG10	A0A091VJK9	A0A091VT99	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	0.794
GNB5	GNG13	A0A091VJK9	A0A091VA21	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.817
GNB5	GNG2	A0A091VJK9	A0A091VRH7	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.798
GNB5	GNG4	A0A091VJK9	A0A091VVG2	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.798
GNB5	GNG5	A0A091VJK9	A0A091WFF5	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.	0.958
GNB5	GNGT2	A0A091VJK9	A0A091V0Y4	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.810
GNB5	GPSM2	A0A091VJK9	A0A091VLI9	Guanine nucleotide-binding protein subunit beta-5.	G-protein-signaling modulator 2.	0.477
GNB5	KCNJ4	A0A091VJK9	A0A091VZV1	Guanine nucleotide-binding protein subunit beta-5.	Inward rectifier potassium channel 4.	0.618
GNB5	Y956_03834	A0A091VJK9	A0A091V904	Guanine nucleotide-binding protein subunit beta-5.	Gamma-aminobutyric acid type B receptor subunit 1.	0.667