STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CGNL1Cingulin-like 1. (1293 aa)    
Predicted Functional Partners:
TJP1
Tight junction protein ZO-1.
    
 0.925
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.805
TRAPPC6B
Trafficking protein particle complex subunit 6B.
    
 0.791
TRAPPC2
Trafficking protein particle complex subunit 2.
    
 0.787
USO1
General vesicular transport factor p115.
   
 0.718
TRAPPC3
Trafficking protein particle complex subunit 3.
    
 0.682
TRAPPC3L
Trafficking protein particle complex subunit 3-like.
    
 0.682
LCA5
Lebercilin.
    
 0.682
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.669
VPS33A
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.658
Your Current Organism:
Nipponia nippon
NCBI taxonomy Id: 128390
Other names: Ibis nippon, N. nippon, crested ibis
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